New PDF release: ACM transactions on information systems (January)

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The well-known single-link method and its variants produce a socalled dendrogram, which is a tree that iteratively splits a data set into smaller subsets until each subset consists of only one object. Consequently, the root represents the whole data set, and the leaves represent individual objects. A different hierarchical clustering algorithm, which generalizes density-based clustering, is OPTICS [Ankerst et al. 1999]. This algorithm produces another type of output, a so-called reachability plot, which is a bar plot showing clusters as “dents” in the plot.

Ca; S. J. ca. Permission to make digital or hard copies of part or all of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or direct commercial advantage and that copies show this notice on the first page or initial screen of a display along with the full citation. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, to republish, to post on servers, to redistribute to lists, or to use any component of this work in other works requires prior specific permission and/or a fee.

2002. PatternHunter: Faster and more sensitive homology search. Bioinformatics 18, 440–445. , AND IMAI, H. 2000. Biological sequence compression algorithms. In Genome Informatics Workshop. Universal Academy Press, 43–52. PEARSON, W. AND LIPMAN, D. 1988. Improved tools for biological sequence comparison. In Proc. Natl. Acad. Sci. USA. Vol. 85. 2444–2448. RISSANEN, J. 1976. Generalized Kraft inequality and arithmetic coding. IBM J. Res. Dev. 20, 3, 198–203. , AND DELGRANGE, O. 1995. A guaranteed compression scheme for repetitive DNA sequences.

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ACM transactions on information systems (January) by Association for Computing Machinery


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